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NGS plumbing 0.13.0 documentation
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NGS plumbing’s documentation
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Contents:
Installation
Install
Bug reports and development
Changes
DNA
Encoding with fewer bits
DNA with quality
Encoding with fewer bits
Parsing
Yet another FASTQ, FASTA, <name it> set of parsers
Pulling entries into a pipeline
Paired-end data
Formats
Sampling
Random sampling
Normalized
random sampling
Working with 1D intervals
Union of intervals in a list
Depth: how many times a base is covered by an interval
XSQ
Making reports for XSQ files
Converting XSQ files
Using the library
Module
Color space
Naive translation
Double encoding
Module
Using SCons for processing pipelines
Change logs
version 0.13.0:
version 0.12.4:
version 0.12.3:
version 0.12.2
version 0.12.1
version 0.12.0
version 0.11.1
version 0.11.0
version 0.10.1
version 0.10.0
version 0.9.1
version 0.9.0
version 0.8.2
version 0.8.1
version 0.8.0
version 0.7.6
version 0.7.5
version 0.7.4
version 0.7.3
version 0.7.2
version 0.7.1
version 0.7.0
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