seriesoftubes: an extended analysis pipeline for ChIP-seq data

Licensed under Perl Artistic License 2.0

No warranty is provided, express or implied

Welcome

More documentation will be posted soon. Seriesoftubes is currently being developed on github at https://github.com/benjschiller/seriesoftubes/

Contents

• Installation of seriesoftubes
• Requirements
  • Python 2.7
  • Setuptools
  • Operating System
  • Python Packages (installed with easy_install)
  • External software dependencies
  • Bowtie2 (recommended) or Bowtie
  • Samtools
• seriesoftubes API
  • seriesoftubes.converters
  • seriesoftubes.fnparsers
  • seriesoftubes.tubes
  • seriesoftubes.bedgraph
• bioplus API (Part of seriesoftubes)
  • bioplus.fasta
  • bioplus.genometools
  • bioplus.motif
  • bioplus.peaktools
  • bioplus.seqtools
  • bioplus.sitefinder
  • bioplus.tabfile
  • bioplus.wrappers

Indices and tables

• Index
• Module Index
• Search Page